Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16504

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1751
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27


Found at i:790 original size:18 final size:18

Alignment explanation


    Indices: 769--816  Score: 60
    Period size: 18  Copynumber: 2.7  Consensus size: 18

        759 TAGGCCCAGT

                     * *      
        769 GATTACTCCCGGCCTAGC
          1 GATTACTCCAGACCTAGC

                    *        *
        787 GATTACTCTAGACCTAGT
          1 GATTACTCCAGACCTAGC

                        
        805 GATTACTCCAGA
          1 GATTACTCCAGA

        817 TGGGGTTCAT


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   25  1.00

ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27


Consensus pattern (18 bp):   
GATTACTCCAGACCTAGC
Done.