Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16443

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1796
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26


Found at i:197 original size:20 final size:20

Alignment explanation


    Indices: 161--202  Score: 50
    Period size: 20  Copynumber: 2.1  Consensus size: 20

        151 GCCTCCTCTG

                      *      *  
        161 ATTACTCCGTTTATCCCCAA
          1 ATTACTCCGTATATCCCAAA

                                 
        181 ATTACCTCCGTAT-TCCCAAA
          1 ATTA-CTCCGTATATCCCAAA

              
        201 AT
          1 AT

        203 CTTGATGCTG


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  20   12  0.63
  21    7  0.37

ACGTcount: A:0.29, C:0.33, G:0.05, T:0.33


Consensus pattern (20 bp):   
ATTACTCCGTATATCCCAAA
Done.