Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16510

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 417

Length: 696
ACGTcount: A:0.20, C:0.34, G:0.20, T:0.26


Found at i:511 original size:33 final size:33

Alignment explanation


    Indices: 460--539  Score: 133
    Period size: 33  Copynumber: 2.4  Consensus size: 33

        450 TCCCATTGTG

                *               *             
        460 CCGGAACCGACACCATCTGCCGAGGTGCCTGATT
          1 CCGGCACC-ACACCATCTGCAGAGGTGCCTGATT

                                             
        494 CCGGCACCACACCATCTGCAGAGGTGCCTGATT
          1 CCGGCACCACACCATCTGCAGAGGTGCCTGATT

                         
        527 CCGGCACCACACC
          1 CCGGCACCACACC

        540 GGCTCTAACT


Statistics
Matches: 44,  Mismatches: 2, Indels: 1
        0.94            0.04        0.02

Matches are distributed among these distances:
  33   37  0.84
  34    7  0.16

ACGTcount: A:0.21, C:0.40, G:0.24, T:0.15


Consensus pattern (33 bp):   
CCGGCACCACACCATCTGCAGAGGTGCCTGATT
Done.