Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37546

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 345

Length: 576
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22


Found at i:53 original size:15 final size:15

Alignment explanation


    Indices: 13--53  Score: 55
    Period size: 15  Copynumber: 2.7  Consensus size: 15

          3 GGCGCCCAAA

                          *
         13 GCCGAGAAGAAGCCT
          1 GCCGAGAAGAAGCCG

              *            
         28 GCTGAGAAGAAGCCG
          1 GCCGAGAAGAAGCCG

                  *    
         43 GCCGAGGAGAA
          1 GCCGAGAAGAA

         54 AAAGACTACC


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  15   22  1.00

ACGTcount: A:0.34, C:0.22, G:0.39, T:0.05


Consensus pattern (15 bp):   
GCCGAGAAGAAGCCG
Done.