Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23544

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 316

Length: 528
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.25


Found at i:358 original size:3 final size:3

Alignment explanation


    Indices: 352--402  Score: 102
    Period size: 3  Copynumber: 17.0  Consensus size: 3

        342 AGCAGCAGCC

                                                                           
        352 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
          1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT

               
        400 CAT
          1 CAT

        403 GGTCATAGCT


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   48  1.00

ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33


Consensus pattern (3 bp):   
CAT

Done.