Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08580

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 532

Length: 888
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26


Found at i:530 original size:3 final size:3

Alignment explanation


    Indices: 502--550  Score: 62
    Period size: 3  Copynumber: 16.3  Consensus size: 3

        492 ACCTTCCACT

                    *           *       *                            *     
        502 CCA CCA TCA CCA CCA TCA CCA TCA CCA CCA CCA CCA CCA CCA CTA CCA
          1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA

             
        550 C
          1 C

        551 AACAATCACC


Statistics
Matches: 38,  Mismatches: 8, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
   3   38  1.00

ACGTcount: A:0.33, C:0.59, G:0.00, T:0.08


Consensus pattern (3 bp):   
CCA
Done.