Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23407

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3125
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31


Found at i:1095 original size:24 final size:24

Alignment explanation


    Indices: 1063--1110  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1053 TCTTTAACCA

                                    
       1063 ACTGCAGTGGACTGAAGGTTTTGG
          1 ACTGCAGTGGACTGAAGGTTTTGG

                                    
       1087 ACTGCAGTGGACTGAAGGTTTTGG
          1 ACTGCAGTGGACTGAAGGTTTTGG

       1111 CAATCCATAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.21, C:0.12, G:0.38, T:0.29


Consensus pattern (24 bp):   
ACTGCAGTGGACTGAAGGTTTTGG
Done.