Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29169

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2283
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33


Found at i:162 original size:6 final size:6

Alignment explanation


    Indices: 151--245  Score: 109
    Period size: 6  Copynumber: 15.8  Consensus size: 6

        141 TCCGCCCCCA

                           *      *      *              *     *    
        151 CCGCCT CCGCCT CGGCCT CTGCCT CGGCCT CCGCCT CCACCT CTGCCT
          1 CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT

             * *      *      *                                    
        199 CTGTCT CCGTCT CCGTCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCC
          1 CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCC

        246 ATCATTTGCC


Statistics
Matches: 79,  Mismatches: 10, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   6   79  1.00

ACGTcount: A:0.01, C:0.59, G:0.18, T:0.22


Consensus pattern (6 bp):   
CCGCCT

Done.