Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33376

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2943
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29


Found at i:13 original size:3 final size:3

Alignment explanation


    Indices: 6--30  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

          1 ATGGA

                                             
          6 GGC GGC GGC GGC GGC GGC GGC GGC G
          1 GGC GGC GGC GGC GGC GGC GGC GGC G

         31 AAAAGGAAGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.00, C:0.32, G:0.68, T:0.00


Consensus pattern (3 bp):   
GGC

Done.