Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10780

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 296

Length: 494
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26


Found at i:93 original size:12 final size:12

Alignment explanation


    Indices: 72--102  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

         62 ACCACACCAA

                        
         72 CTGGGACTGGGG
          1 CTGGGACTGGGG

                 *      
         84 CTGGGGCTGGGG
          1 CTGGGACTGGGG

                   
         96 CTGGGAC
          1 CTGGGAC

        103 CCTACCATCC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.06, C:0.19, G:0.58, T:0.16


Consensus pattern (12 bp):   
CTGGGACTGGGG
Done.