Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_34323

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 534

Length: 891
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25


Found at i:572 original size:15 final size:15

Alignment explanation


    Indices: 552--589  Score: 76
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        542 AACCACTACT

                           
        552 TCCACCTGGGCAGTA
          1 TCCACCTGGGCAGTA

                           
        567 TCCACCTGGGCAGTA
          1 TCCACCTGGGCAGTA

                    
        582 TCCACCTG
          1 TCCACCTG

        590 CACAACAGCA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.18, C:0.37, G:0.24, T:0.21


Consensus pattern (15 bp):   
TCCACCTGGGCAGTA
Done.