Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00468

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2424
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27


Found at i:700 original size:21 final size:21

Alignment explanation


    Indices: 676--720  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        666 TAGCAATAAC

                                 
        676 AAAGGGGAGTCAAATACCATG
          1 AAAGGGGAGTCAAATACCATG

                ** **            
        697 AAAGTTGCTTCAAATACCATG
          1 AAAGGGGAGTCAAATACCATG

               
        718 AAA
          1 AAA

        721 CCTGCAAGGC


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.44, C:0.16, G:0.20, T:0.20


Consensus pattern (21 bp):   
AAAGGGGAGTCAAATACCATG
Done.