Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17645

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 381

Length: 635
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33


Found at i:536 original size:3 final size:3

Alignment explanation


    Indices: 528--553  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

        518 TTGCAGATGG

                                              
        528 GAA GAA GAA GAA GAA GAA GAA GAA GA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GA

        554 TAGAGAAGGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00


Consensus pattern (3 bp):   
GAA

Done.