Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06958

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3138
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29


Found at i:243 original size:12 final size:12

Alignment explanation


    Indices: 226--250  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        216 AGCCACTATC

                        
        226 GCTGCTGGTACT
          1 GCTGCTGGTACT

                        
        238 GCTGCTGGTACT
          1 GCTGCTGGTACT

             
        250 G
          1 G

        251 GGGCTACTGC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.08, C:0.24, G:0.36, T:0.32


Consensus pattern (12 bp):   
GCTGCTGGTACT
Done.