Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09564

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 565

Length: 942
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30


Found at i:811 original size:18 final size:18

Alignment explanation


    Indices: 788--826  Score: 78
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        778 TTCAAACCTG

                              
        788 TCACGGGTTCTGCAATTT
          1 TCACGGGTTCTGCAATTT

                              
        806 TCACGGGTTCTGCAATTT
          1 TCACGGGTTCTGCAATTT

               
        824 TCA
          1 TCA

        827 TGTTTAGGAC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38


Consensus pattern (18 bp):   
TCACGGGTTCTGCAATTT
Done.