Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33572

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 595

Length: 993
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29


Found at i:45 original size:19 final size:18

Alignment explanation


    Indices: 17--52  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

          7 AAGTTACCTT

                              
         17 CTTTGTTTCTGGTTTTGA
          1 CTTTGTTTCTGGTTTTGA

                        *     
         35 CTTTGGTTTCTGTTTTTG
          1 CTTT-GTTTCTGGTTTTG

         53 TTTGTGGGTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    4  0.25
  19   12  0.75

ACGTcount: A:0.03, C:0.11, G:0.22, T:0.64


Consensus pattern (18 bp):   
CTTTGTTTCTGGTTTTGA
Done.