Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19267

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 588

Length: 981
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28


Found at i:169 original size:12 final size:12

Alignment explanation


    Indices: 152--176  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        142 ACTGGGACTA

                        
        152 GAGCCGTTTCGG
          1 GAGCCGTTTCGG

                        
        164 GAGCCGTTTCGG
          1 GAGCCGTTTCGG

             
        176 G
          1 G

        177 GTCCGGGAAG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.08, C:0.24, G:0.44, T:0.24


Consensus pattern (12 bp):   
GAGCCGTTTCGG
Done.