Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_01404

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 253

Length: 423
ACGTcount: A:0.38, C:0.11, G:0.37, T:0.14


Found at i:314 original size:3 final size:3

Alignment explanation


    Indices: 308--332  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        298 AATAACAACG

                                             
        308 ATA ATA ATA ATA ATA ATA ATA ATA A
          1 ATA ATA ATA ATA ATA ATA ATA ATA A

        333 CAGAAGGGAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (3 bp):   
ATA

Done.