Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37226

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 493

Length: 822
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26


Found at i:741 original size:18 final size:18

Alignment explanation


    Indices: 718--753  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        708 TACCATCAGT

                              
        718 TTGAAGGAGAATGGATTC
          1 TTGAAGGAGAATGGATTC

                              
        736 TTGAAGGAGAATGGATTC
          1 TTGAAGGAGAATGGATTC

        754 AAGCAGAACC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.33, C:0.06, G:0.33, T:0.28


Consensus pattern (18 bp):   
TTGAAGGAGAATGGATTC
Done.