Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17386

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 237

Length: 396
ACGTcount: A:0.17, C:0.23, G:0.27, T:0.34


Found at i:49 original size:18 final size:18

Alignment explanation


    Indices: 28--62  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

         18 TGAATATGCA

                        *     
         28 TTGTCGTTGCTGTTGCTG
          1 TTGTCGTTGCTGCTGCTG

                *            
         46 TTGTTGTTGCTGCTGCT
          1 TTGTCGTTGCTGCTGCT

         63 CGTTCCTTTC


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.00, C:0.17, G:0.31, T:0.51


Consensus pattern (18 bp):   
TTGTCGTTGCTGCTGCTG
Done.