Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05354

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2745
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29


Found at i:2542 original size:21 final size:21

Alignment explanation


    Indices: 2516--2560  Score: 81
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       2506 ATGCAAATTG

                                 
       2516 ATGATGAGGAGCCTCTTATGA
          1 ATGATGAGGAGCCTCTTATGA

                             *   
       2537 ATGATGAGGAGCCTCTTGTGA
          1 ATGATGAGGAGCCTCTTATGA

               
       2558 ATG
          1 ATG

       2561 GTGTACTTGA


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.27, C:0.13, G:0.31, T:0.29


Consensus pattern (21 bp):   
ATGATGAGGAGCCTCTTATGA
Done.