Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37662

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2967
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28


Found at i:2671 original size:12 final size:12

Alignment explanation


    Indices: 2654--2678  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       2644 GAGAAGAAAG

                        
       2654 CAGAGCCGGAGC
          1 CAGAGCCGGAGC

                        
       2666 CAGAGCCGGAGC
          1 CAGAGCCGGAGC

             
       2678 C
          1 C

       2679 GACATTTGAG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.24, C:0.36, G:0.40, T:0.00


Consensus pattern (12 bp):   
CAGAGCCGGAGC
Done.