Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11041

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 526

Length: 878
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.23


Found at i:222 original size:3 final size:3

Alignment explanation


    Indices: 211--240  Score: 51
    Period size: 3  Copynumber: 10.0  Consensus size: 3

        201 ACAACAACAA

                 *                                 
        211 GAT GTT GAT GAT GAT GAT GAT GAT GAT GAT
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT

        241 TTCTTCAGTT


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.30, C:0.00, G:0.33, T:0.37


Consensus pattern (3 bp):   
GAT

Done.