Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23564

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2001
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30


Found at i:94 original size:3 final size:3

Alignment explanation


    Indices: 86--118  Score: 66
    Period size: 3  Copynumber: 11.0  Consensus size: 3

         76 CCTCCCACTT

                                                       
         86 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC
          1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC

        119 TTCTCCTCCC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.33, C:0.67, G:0.00, T:0.00


Consensus pattern (3 bp):   
CAC

Done.