Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09817

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 237

Length: 396
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.24


Found at i:213 original size:21 final size:21

Alignment explanation


    Indices: 175--214  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        165 ACCTGCTGTT

                        *        
        175 GAGGAGGAAGTTGCTGTTGAA
          1 GAGGAGGAAGTTCCTGTTGAA

                                
        196 GAGGAGGAAG-TCCTTGTTG
          1 GAGGAGGAAGTTCC-TGTTG

        215 TAAATGTGAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    2  0.12
  21   15  0.88

ACGTcount: A:0.25, C:0.07, G:0.42, T:0.25


Consensus pattern (21 bp):   
GAGGAGGAAGTTCCTGTTGAA
Done.