Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_35189

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 340

Length: 567
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27


Found at i:142 original size:6 final size:6

Alignment explanation


    Indices: 109--140  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

         99 CAACTACACT

                                          *      
        109 GGTTGG GGTTGG GGTTGG GGTTGG GGCTGG GG
          1 GGTTGG GGTTGG GGTTGG GGTTGG GGTTGG GG

        141 CTCCTCGAAG


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.00, C:0.03, G:0.69, T:0.28


Consensus pattern (6 bp):   
GGTTGG
Done.