Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33396

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 349

Length: 582
ACGTcount: A:0.33, C:0.16, G:0.32, T:0.20


Found at i:308 original size:6 final size:6

Alignment explanation


    Indices: 297--328  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

        287 TGGAGCTGGT

                                 *               
        297 GCAGGA GCAGGA GCAGGA ACAGGA GCAGGA GC
          1 GCAGGA GCAGGA GCAGGA GCAGGA GCAGGA GC

        329 CACAGCCGCA


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.34, C:0.19, G:0.47, T:0.00


Consensus pattern (6 bp):   
GCAGGA

Done.