Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17543

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 912

Length: 1521
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.22


Found at i:1357 original size:3 final size:3

Alignment explanation


    Indices: 1351--1382  Score: 64
    Period size: 3  Copynumber: 10.7  Consensus size: 3

       1341 ACAACAAGAA

                                                      
       1351 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA

       1383 AAGTAATACA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31


Consensus pattern (3 bp):   
GAT

Done.