Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10478

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 738

Length: 1230
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25


Found at i:329 original size:3 final size:3

Alignment explanation


    Indices: 323--357  Score: 52
    Period size: 3  Copynumber: 11.7  Consensus size: 3

        313 TTGGATGATG

                            *       *                     
        323 ATA ATA ATA ATA GTA ATA GTA ATA ATA ATA ATA AT
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT

        358 GTGCAGTACC


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   3   28  1.00

ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34


Consensus pattern (3 bp):   
ATA

Done.