Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_01115

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2271
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29


Found at i:45 original size:12 final size:12

Alignment explanation


    Indices: 27--62  Score: 63
    Period size: 12  Copynumber: 3.0  Consensus size: 12

         17 ATTATGGAAT

                        
         27 TGATTATGATGA
          1 TGATTATGATGA

              *         
         39 TGGTTATGATGA
          1 TGATTATGATGA

                        
         51 TGATTATGATGA
          1 TGATTATGATGA

         63 CTACGACTAT


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  12   22  1.00

ACGTcount: A:0.31, C:0.00, G:0.28, T:0.42


Consensus pattern (12 bp):   
TGATTATGATGA
Done.