Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38477

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 261

Length: 435
ACGTcount: A:0.20, C:0.16, G:0.37, T:0.26


Found at i:334 original size:18 final size:18

Alignment explanation


    Indices: 313--356  Score: 54
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        303 TGGTCTCGGC

                        *      
        313 GGTTTAGGTGGGGCC-GGA
          1 GGTTTAGGT-GGACCAGGA

                   *          
        331 GGTTTAGATGGACCAGGA
          1 GGTTTAGGTGGACCAGGA

                    
        349 GGTTTAGG
          1 GGTTTAGG

        357 CGGTGGAGCA


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  17    4  0.18
  18   18  0.82

ACGTcount: A:0.18, C:0.09, G:0.48, T:0.25


Consensus pattern (18 bp):   
GGTTTAGGTGGACCAGGA
Done.