Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23940

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 642

Length: 1071
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26


Found at i:892 original size:27 final size:27

Alignment explanation


    Indices: 862--913  Score: 104
    Period size: 27  Copynumber: 1.9  Consensus size: 27

        852 CCGCCATGAG

                                       
        862 TTGCCGGTTAGCAGTACCGATGAACAA
          1 TTGCCGGTTAGCAGTACCGATGAACAA

                                     
        889 TTGCCGGTTAGCAGTACCGATGAAC
          1 TTGCCGGTTAGCAGTACCGATGAAC

        914 TATCTAGCAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   25  1.00

ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23


Consensus pattern (27 bp):   
TTGCCGGTTAGCAGTACCGATGAACAA
Done.