Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04136

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1095
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26


Found at i:450 original size:6 final size:6

Alignment explanation


    Indices: 418--449  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

        408 TTCTGAGAAT

                                          *      
        418 GATAGG GATAGG GATAGG GATAGG GACAGG GA
          1 GATAGG GATAGG GATAGG GATAGG GATAGG GA

        450 CGGAGTAATT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.34, C:0.03, G:0.50, T:0.12


Consensus pattern (6 bp):   
GATAGG
Done.