Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17720

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2100
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23


Found at i:1351 original size:18 final size:18

Alignment explanation


    Indices: 1324--1358  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       1314 CAATGAAGAA

                              
       1324 GAGGAAGAGGAAGAAAGT
          1 GAGGAAGAGGAAGAAAGT

                 *     *     
       1342 GAGGAGGAGGATGAAAG
          1 GAGGAAGAGGAAGAAAG

       1359 CTTTGGTGCT


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.46, C:0.00, G:0.49, T:0.06


Consensus pattern (18 bp):   
GAGGAAGAGGAAGAAAGT
Done.