Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33695

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1779
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24


Found at i:57 original size:3 final size:3

Alignment explanation


    Indices: 49--78  Score: 51
    Period size: 3  Copynumber: 10.0  Consensus size: 3

         39 GGGTCTCCAT

                         *                         
         49 TCA TCA TCA TTA TCA TCA TCA TCA TCA TCA
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA

         79 AAAGTATCAA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37


Consensus pattern (3 bp):   
TCA

Done.