Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00138

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1995
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.24


Found at i:906 original size:6 final size:6

Alignment explanation


    Indices: 862--903  Score: 75
    Period size: 6  Copynumber: 7.0  Consensus size: 6

        852 TCACTCAGCA

                                                      *     
        862 GCTCCT GCTCCT GCTCCT GCTCCT GCTCCT GCTCCT ACTCCT
          1 GCTCCT GCTCCT GCTCCT GCTCCT GCTCCT GCTCCT GCTCCT

        904 ACTACTACTC


Statistics
Matches: 35,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   35  1.00

ACGTcount: A:0.02, C:0.50, G:0.14, T:0.33


Consensus pattern (6 bp):   
GCTCCT
Done.