Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17068

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 687

Length: 1145
ACGTcount: A:0.24, C:0.37, G:0.14, T:0.26


Found at i:443 original size:24 final size:24

Alignment explanation


    Indices: 388--446  Score: 64
    Period size: 24  Copynumber: 2.5  Consensus size: 24

        378 TCAATCCCCA

                       *       * * *
        388 CCACCACCACCTCCACCATTAGTG
          1 CCACCACCACCACCACCATCAATC

              **                    
        412 CCTTCACCACCACCACCATCAATC
          1 CCACCACCACCACCACCATCAATC

                       
        436 CCACCACCACC
          1 CCACCACCACC

        447 GCTAGTTCTT


Statistics
Matches: 27,  Mismatches: 8, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.27, C:0.56, G:0.03, T:0.14


Consensus pattern (24 bp):   
CCACCACCACCACCACCATCAATC
Done.