Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_27101

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1968
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26


Found at i:451 original size:17 final size:17

Alignment explanation


    Indices: 426--459  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        416 CTGCTAAGAC

                             
        426 CTTGGTATCAGAAATCT
          1 CTTGGTATCAGAAATCT

                *     *      
        443 CTTGTTATCATAAATCT
          1 CTTGGTATCAGAAATCT

        460 GAGCAACAAA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41


Consensus pattern (17 bp):   
CTTGGTATCAGAAATCT
Done.