Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19971

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 555

Length: 925
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25


Found at i:638 original size:30 final size:30

Alignment explanation


    Indices: 602--724  Score: 165
    Period size: 30  Copynumber: 4.1  Consensus size: 30

        592 GTCCCAGAGT

                          *               
        602 AGTTCATATAACCCAGACATAGGTGGTTCG
          1 AGTTCATATAACCCGGACATAGGTGGTTCG

                     *          *         
        632 AGTTCATATCACCCGGACATGGGTGGTTCG
          1 AGTTCATATAACCCGGACATAGGTGGTTCG

                     *  *       *         
        662 AGTTCATATCACTCGGACATGGGTGGTTCG
          1 AGTTCATATAACCCGGACATAGGTGGTTCG

                             *     **     
        692 AGTTCATATAACCCGGATATAGGCAGTTCG
          1 AGTTCATATAACCCGGACATAGGTGGTTCG

               
        722 AGT
          1 AGT

        725 CCATTTGACC


Statistics
Matches: 83,  Mismatches: 10, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  30   83  1.00

ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28


Consensus pattern (30 bp):   
AGTTCATATAACCCGGACATAGGTGGTTCG

Done.