Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40250

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1967
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26


Found at i:359 original size:36 final size:36

Alignment explanation


    Indices: 312--389  Score: 138
    Period size: 36  Copynumber: 2.2  Consensus size: 36

        302 GTTCAGGGAC

                                 *              
        312 TCCATCGCGACCACCACCTTCGAGGAGTTCGGGAAA
          1 TCCATCGCGACCACCACCTTCAAGGAGTTCGGGAAA

                                               *
        348 TCCATCGCGACCACCACCTTCAAGGAGTTCGGGAAC
          1 TCCATCGCGACCACCACCTTCAAGGAGTTCGGGAAA

                  
        384 TCCATC
          1 TCCATC

        390 TCGTCCGTCG


Statistics
Matches: 40,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  36   40  1.00

ACGTcount: A:0.24, C:0.36, G:0.22, T:0.18


Consensus pattern (36 bp):   
TCCATCGCGACCACCACCTTCAAGGAGTTCGGGAAA
Done.