Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03321

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 568

Length: 948
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24


Found at i:232 original size:24 final size:24

Alignment explanation


    Indices: 205--253  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        195 TGAACAATAT

                                    
        205 CTCAAGCATGTCCCTTCTGCAGCC
          1 CTCAAGCATGTCCCTTCTGCAGCC

                                    
        229 CTCAAGCATGTCCCTTCTGCAGCC
          1 CTCAAGCATGTCCCTTCTGCAGCC

             
        253 C
          1 C

        254 CCCTTACATT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.16, C:0.43, G:0.16, T:0.24


Consensus pattern (24 bp):   
CTCAAGCATGTCCCTTCTGCAGCC
Done.