Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04236

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1803
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25


Found at i:40 original size:15 final size:15

Alignment explanation


    Indices: 20--48  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

         10 GACGCGAGCA

                           
         20 AGAAGAAGGCTGCTC
          1 AGAAGAAGGCTGCTC

                          
         35 AGAAGAAGGCTGCT
          1 AGAAGAAGGCTGCT

         49 GCCGCTGCGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.34, C:0.17, G:0.34, T:0.14


Consensus pattern (15 bp):   
AGAAGAAGGCTGCTC
Done.