Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08878

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3459
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28


Found at i:1326 original size:24 final size:24

Alignment explanation


    Indices: 1289--1336  Score: 69
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1279 CCTGATGAAA

                     *        *     
       1289 ACAATGCAATTGTTGAAACTAAAG
          1 ACAATGCAAATGTTGAAAATAAAG

                  *                 
       1313 ACAATGGAAATGTTGAAAATAAAG
          1 ACAATGCAAATGTTGAAAATAAAG

       1337 TCTCATTTGA


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  24   21  1.00

ACGTcount: A:0.50, C:0.08, G:0.19, T:0.23


Consensus pattern (24 bp):   
ACAATGCAAATGTTGAAAATAAAG
Done.