Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37722

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2190
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28


Found at i:2144 original size:16 final size:16

Alignment explanation


    Indices: 2123--2154  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       2113 GAAGTGGACA

                            
       2123 TGAAAATGGTGGAAAG
          1 TGAAAATGGTGGAAAG

                            
       2139 TGAAAATGGTGGAAAG
          1 TGAAAATGGTGGAAAG

       2155 ATTTGTGAAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.44, C:0.00, G:0.38, T:0.19


Consensus pattern (16 bp):   
TGAAAATGGTGGAAAG
Done.