Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05727

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2607
ACGTcount: A:0.36, C:0.17, G:0.27, T:0.20


Found at i:229 original size:15 final size:15

Alignment explanation


    Indices: 209--239  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        199 CTGCGATCAT

                           
        209 CGCTTAATTCGAAGC
          1 CGCTTAATTCGAAGC

                           
        224 CGCTTAATTCGAAGC
          1 CGCTTAATTCGAAGC

             
        239 C
          1 C

        240 TTCGATTGAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26


Consensus pattern (15 bp):   
CGCTTAATTCGAAGC
Done.