Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26439

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 757

Length: 1263
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28


Found at i:1166 original size:42 final size:42

Alignment explanation


    Indices: 1107--1189  Score: 157
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       1097 ACTGTAACGT

                                        *             
       1107 AGTAGACGGTACGGAGCTTTCGAACCCATTTTCAGCTGTTGC
          1 AGTAGACGGTACGGAGCTTTCGAACCCACTTTCAGCTGTTGC

                                                     
       1149 AGTAGACGGTACGGAGCTTTCGAACCCACTTTCAGCTGTTG
          1 AGTAGACGGTACGGAGCTTTCGAACCCACTTTCAGCTGTTG

       1190 AGGAGTTGAT


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  42   40  1.00

ACGTcount: A:0.22, C:0.24, G:0.27, T:0.28


Consensus pattern (42 bp):   
AGTAGACGGTACGGAGCTTTCGAACCCACTTTCAGCTGTTGC
Done.