Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17374

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 966

Length: 1611
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30


Found at i:139 original size:21 final size:20

Alignment explanation


    Indices: 114--152  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 20

        104 TCGTTGCGGT

                                  
        114 TGCCGCGTT-GCTTATCTCTAC
          1 TGCCGC-TTGGCTT-TCTCTAC

                              
        135 TGCCGCTTGGCTTTCTCT
          1 TGCCGCTTGGCTTTCTCT

        153 TGTTTTCTCC


Statistics
Matches: 17,  Mismatches: 0, Indels: 3
        0.85            0.00        0.15

Matches are distributed among these distances:
  20    7  0.41
  21   10  0.59

ACGTcount: A:0.05, C:0.33, G:0.21, T:0.41


Consensus pattern (20 bp):   
TGCCGCTTGGCTTTCTCTAC
Done.