Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37017

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 216

Length: 360
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.30


Found at i:24 original size:15 final size:15

Alignment explanation


    Indices: 4--33  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

          1 ATG

                           
          4 TATATGATGAAATGT
          1 TATATGATGAAATGT

                           
         19 TATATGATGAAATGT
          1 TATATGATGAAATGT

         34 ACTCAAGGTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40


Consensus pattern (15 bp):   
TATATGATGAAATGT
Done.