Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03704

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 401

Length: 669
ACGTcount: A:0.26, C:0.19, G:0.37, T:0.19


Found at i:474 original size:3 final size:3

Alignment explanation


    Indices: 466--497  Score: 64
    Period size: 3  Copynumber: 10.7  Consensus size: 3

        456 AGTAGGTCCG

                                                      
        466 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
          1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG

        498 GTTCAATGGA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.00, C:0.00, G:0.69, T:0.31


Consensus pattern (3 bp):   
GGT

Done.