Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04198

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2793
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28


Found at i:2696 original size:21 final size:21

Alignment explanation


    Indices: 2672--2714  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2662 GAGTCGATGG

                             *    
       2672 GTGA-TATGAAGTCAGCTCTCT
          1 GTGATTATGAAG-CAGCACTCT

                  *              
       2693 GTGATTGTGAAGCAGCACTCT
          1 GTGATTATGAAGCAGCACTCT

             
       2714 G
          1 G

       2715 CTTGGAACCG


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  21   13  0.68
  22    6  0.32

ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30


Consensus pattern (21 bp):   
GTGATTATGAAGCAGCACTCT
Done.